DatabaseData, software & discovery
Home - SRA - NCBI
NCBI SRA provides sequencing-study records and raw data.
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Research field / 13
Data, software & discovery
Go from a paper to the underlying work.
Repositories, reference genomes, analysis environments and metadata APIs make research reusable. This directory connects researchers to the original providers. Keep accession numbers, software versions, consent conditions and analysis provenance with every result.
Questions that matter
- Can the underlying data and code be located?
- Which version, license and access restrictions apply?
- Can an independent researcher reproduce the analysis?
Sources & resources
Read our evidence note, then follow the original source.
DatabaseData, software & discovery
NCBI dbGaP
dbGaP links genotype and phenotype studies with controlled-access research data.
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DatabaseData, software & discovery
European Nucleotide Archive
EMBL-EBI introduces the European Nucleotide Archive's sequence holdings.
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StandardData, software & discovery
Refget Specifications
GA4GH refget supports unambiguous reference-sequence identifiers and retrieval.
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API documentationData, software & discovery
How to Download Records using the ENA Browser API — ENA Documentation 1 documentation
ENA documents programmatic sequence-record retrieval.
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Reference resourceData, software & discovery
Our products – GA4GH
GA4GH catalogs genomic data, security and interoperability standards.
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SoftwareData, software & discovery
Quickstart Tutorial
GA4GH Starter Kit demonstrates genomic data-service implementations.
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SoftwareData, software & discovery
BLAST: Basic Local Alignment Search Tool
NCBI BLAST compares biological sequences with reference databases.
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SoftwareData, software & discovery
Galaxy Hub
Galaxy supports web-based, reproducible biomedical analyses.
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DatabaseData, software & discovery
BioStudies < The European Bioinformatics Institute < EMBL-EBI
BioStudies links data and supporting materials for biological studies.
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DatabaseData, software & discovery
Datasets - NCBI - NLM
NCBI Datasets packages genomes, annotations and metadata.
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DatabaseData, software & discovery
Ensembl
Ensembl supplies genome annotation and comparative-genomics resources.
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SoftwareData, software & discovery
UCSC Genome Browser
UCSC supports genome visualization, track queries and coordinate conversion.
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DatabaseData, software & discovery
MetaboLights
MetaboLights holds metabolomics studies, raw measurements and metadata.
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DatabaseData, software & discovery
PRIDE Archive
PRIDE archives mass-spectrometry evidence for proteins and peptides.
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API documentationData, software & discovery
PRIDE Archive API Guide
PRIDE documents project, file and metadata queries.
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SoftwareData, software & discovery
QIIME 2 Homepage
QIIME 2 provides reproducible microbiome and multi-omics analysis.
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SoftwareData, software & discovery
Bioconductor - Home
Bioconductor supplies open-source biological data-analysis tools.
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API documentationData, software & discovery
Europe PMC
Europe PMC documents publication and preprint search.
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API documentationData, software & discovery
REST API - Crossref
Crossref exposes bibliographic metadata, identifiers and publication updates.
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API documentationData, software & discovery
API reference
OpenAlex supports discovery across works, authors, institutions and topics.
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